Fitness data for PP_0865 in Pseudomonas putida KT2440

ECF subfamily RNA polymerase sigma-24 factor
SEED: FIG006045: Sigma factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8 -2.3 compare
pH Growth at pH9 and (C) Trisodium citrate -0.8 -1.7 compare
carbon source L-Phenylalanine 5 mM (C) -0.7 -2.4 compare
carbon source D-Glucose (C) -0.7 -1.7 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.7 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 -0.9 compare
phage P. put South MOI 10 -0.7 -2.1 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.6 -2.8 compare
carbon source ferulate (C); with MOPS -0.6 -1.3 compare
pH Growth at pH9 and (C) Trisodium citrate -0.6 -1.5 compare
stress Growth with Chloride 200 mM -0.6 -1.7 compare
stress Growth with Chloride 500 mM -0.6 -2.0 compare
carbon source D-Glucose (C) -0.6 -1.4 compare
phage P. putida PUT 7 MOI 1 -0.6 -1.4 compare
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant +0.6 +1.1 compare
pH pH 8 +0.6 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.7 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.7 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.7 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.7 +1.8 compare