Fitness data for PP_0762 in Pseudomonas putida KT2440

Glycerate dehydrogenase
SEED: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
KEGG: glycerate dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0 -1.8 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.9 -2.1 compare
pH pH 7 -0.7 -1.6 compare
pH Valerolactone (C) pH 6.5 -0.7 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.7 -1.4 compare
temperature shift Temperature shift 10_to_34; with MOPS +0.6 +2.6 compare
temperature Growth at 25C +0.6 +1.6 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.7 +2.9 compare
phage P. putida Missley MOI 0.1 +0.7 +2.0 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +0.7 +2.5 compare
pH Growth at pH7 and (C) Trisodium citrate +0.7 +1.6 compare
stress Growth with Chloride 500 mM; with MOPS +0.7 +1.9 compare
carbon source ferulate (C); with MOPS +0.7 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +2.5 compare
stress Growth with Chloride 500 mM; with MOPS +0.8 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.2 compare
no stress control Growth with no stress +0.8 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.9 +3.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +1.4 compare