Fitness data for PP_0667 in Pseudomonas putida KT2440

RNA polymerase sigma-70 factor, ECF subfamily
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.8 -2.8 compare
phage P. putida Sci small MOI 0.1 -0.7 -1.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -1.9 compare
stress R2A with Fusaric 240 ug/mL -0.6 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.3 compare
microaerobic m9 microaerobic M9 -0.6 -2.5 compare
carbon source Myristic (C) -0.5 -1.3 compare
pH pH 4 -0.5 -1.6 compare
pH Growth at pH7 and (C) D-Glucose +0.5 +1.4 compare
nitrogen source nitrogen source nitrite 1mM +0.5 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5 +1.4 compare
nitrogen source nitrite (N) +0.5 +2.2 compare
carbon source ferulate (C); with MOPS +0.6 +2.0 compare
reactor_pregrowth Adaptation in M9 media timecourse 3; day 2 +0.6 +2.9 compare
nitrogen source Urea (N) +0.6 +1.8 compare
pH Growth at pH6 and (C) D-Glucose +0.7 +1.8 compare