Fitness data for PP_0658 in Pseudomonas putida KT2440

Homocysteine S-methyltransferase family protein
SEED: Homocysteine S-methyltransferase (EC 2.1.1.10)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source Valeric (C) -0.6 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.4 -2.2 compare
phage P. putida Sci small MOI 0.1 -0.4 -1.2 compare
stress Growth with Chloride 200 mM -0.4 -1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.4 -2.5 compare
temperature shift Temperature shift 10_to_30 -0.4 -2.2 compare
micoeukaryotes C.elegans, mixed culture-2 -0.4 -1.7 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4 -1.9 compare
nitrogen source nitrogen source nitrite 0.5mM +0.4 +1.6 compare
nitrogen source Ammonium chloride and TNT (N) +0.4 +2.7 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.4 +1.8 compare
carbon source ferulate (C); with MOPS +0.4 +1.4 compare
nitrogen source D-2-Aminobutyric (N) +0.4 +1.5 compare
temperature shift Temperature shift 30_to_34; with MOPS +0.4 +2.1 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.5 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.0 compare