Fitness data for PP_0657 in Pseudomonas putida KT2440

putative Amino acid ABC transporter, periplasmic amino acid-binding protein
SEED: Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)
KEGG: polar amino acid transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -1.1 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.7 compare
phage P. putida PUT 7 MOI 1 -0.8 -2.1 compare
carbon source D-Glucose (C); with MOPS -0.7 -1.9 compare
pH D-Glucose (C) pH 6 -0.7 -2.1 compare
nitrogen source 2,6-diaminopimelic (N) -0.6 -1.1 compare
carbon source ferulate (C); with MOPS -0.6 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -1.7 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.6 +3.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 +1.4 compare
supernatant Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM +0.6 +2.9 compare
temperature Growth at 30C; with MOPS +0.6 +2.8 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.6 +2.0 compare
nitrogen source nitrate (N) +0.6 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +2.4 compare
carbon source 4-Aminobutyric 10 mM (C) +0.8 +2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +2.9 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +1.7 compare