Fitness data for PP_0636 in Pseudomonas putida KT2440

Cold shock DNA-binding domain protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -2.9 compare
carbon source D-Glucose (C); with MOPS -0.4 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -1.7 compare
carbon source carbon source Bisabolene 48.9 mM -0.4 -1.9 compare
pH pH 5 -0.4 -1.8 compare
carbon source D-Glucose (C) -0.4 -1.5 compare
pH pH 8 -0.4 -1.7 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -0.4 -2.1 compare
carbon source L-Leucine (C) -0.4 -1.7 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.4 +1.5 compare
carbon source butyrate (C) +0.4 +1.6 compare
nitrogen source 2,6-diaminopimelic (N) +0.4 +1.8 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM +0.4 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.4 compare
nitrogen source nitrite (N) +0.5 +2.5 compare
pH Growth at pH6 and (C) D-Glucose +0.5 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +2.2 compare
phage P. putida Sci small MOI 0.1 +0.5 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.9 compare