Fitness data for PP_0592 in Pseudomonas putida KT2440

Oxidoreductase, short chain dehydrogenase/reductase family
SEED: Short-chain dehydrogenase/reductase SDR

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
pH Growth at pH7 and (C) D-Glucose -1.3 -2.7 compare
pH Growth at pH8 and (C) D-Glucose -1.2 -5.1 compare
no stress control Growth with no stress -0.9 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 -2.3 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM -0.8 -2.9 compare
nitrogen source no extra (N) -0.7 -3.1 compare
pH Growth at pH6 and (C) D-Glucose -0.7 -1.7 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.7 -3.0 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.7 -2.4 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.7 -2.4 compare
no stress control Growth with no stress -0.7 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 -2.3 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. -0.6 -2.5 compare
pH Valerolactone (C) pH 6.5 -0.6 -2.1 compare
stress Growth with Chloride 200 mM -0.6 -2.3 compare
carbon source 4-Methyl-2-oxopentanoic (C) -0.6 -1.8 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.6 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.4 compare
nitrogen source no extra (N); with MOPS +0.6 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +2.9 compare