Fitness data for PP_0550 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Nucleoside-diphosphate-sugar epimerases

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
nitrogen source Propandiamine (N) -2.0 -2.8 compare
nitrogen source 2,6-diaminopimelic (N) -1.5 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.4 -2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.2 -3.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2 -2.3 compare
stress Growth with Chloride 500 mM; with MOPS -1.2 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.1 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1 -1.1 compare
temperature shift Temperature shift 30_to_34; with MOPS -1.1 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -1.9 compare
pH Growth at pH9 and (C) Trisodium citrate -1.0 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -1.8 compare
temperature shift Temperature shift 30_to_4; with MOPS -0.9 -2.7 compare
pH Growth at pH6 and (C) Trisodium citrate -0.9 -2.7 compare
nitrogen source Urea (N); with MOPS -0.9 -1.0 compare
pH Growth at pH6 and (C) Trisodium citrate -0.9 -1.6 compare
phage P. putida Sci small MOI 0.1 +0.9 +1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +1.0 +3.9 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +2.7 compare
carbon source ferulate (C); with MOPS +1.2 +2.9 compare