Fitness data for PP_0546 in Pseudomonas putida KT2440

sigma-54 dependent transcriptional regulator
SEED: sigma-54 dependent transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source Ethanolamine (N) -1.1 -7.3 compare
nitrogen source Ethanolamine (N) -0.8 -5.3 compare
carbon source Delta-Undecalactone (C) -0.5 -3.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -1.5 compare
carbon source Delta-Decalactone (C) -0.5 -2.5 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM -0.4 -2.4 compare
carbon source Delta-Undecalactone (C) -0.4 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -1.6 compare
carbon source carbon source 4-vinylphenol 0.01 mM -0.4 -2.0 compare
carbon source 1,3-Butandiol (C) -0.4 -1.8 compare
pH Growth at pH7 and (C) D-Glucose +0.4 +1.8 compare
pH Growth at pH6 and (C) D-Glucose +0.4 +2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4 +2.3 compare
temperature shift Temperature shift 30_to_10; with MOPS +0.4 +2.5 compare
carbon source Rhamnogalacturonan - from potato (C) +0.4 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.4 compare
pH Growth at pH9 and (C) Trisodium citrate +0.4 +2.1 compare
pH Growth at pH8 and (C) D-Glucose +0.5 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.7 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +3.2 compare