Fitness data for PP_0535 in Pseudomonas putida KT2440

Outer membrane ferric siderophore receptor
SEED: TonB-dependent siderophore receptor

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
phage P. putida Sci Big MOI 0.1 -0.3 -1.8 compare
carbon source L-Leucine (C) -0.3 -1.8 compare
nitrogen source nitrate (N) -0.3 -1.5 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.3 -1.9 compare
phage P. putida South MOI 0.1 -0.2 -1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -1.5 compare
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.2 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +1.4 compare
temperature shift Temperature shift 30_to_25 +0.2 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +1.6 compare
carbon source Levulinic Acid (C) +0.2 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 +1.6 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.2 +1.7 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. +0.2 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.6 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.3 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 +1.7 compare
nitrogen source NAG (N); with MOPS +0.3 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +2.1 compare