Fitness data for PP_0525 in Pseudomonas putida KT2440

TonB-dependent receptor, B12 family
SEED: Outer membrane vitamin B12 receptor BtuB
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -2.0 compare
nitrogen source D-2-Aminobutyric (N) -0.4 -1.6 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.3 -1.7 compare
nitrogen source NAG (N); with MOPS -0.3 -1.3 compare
nitrogen source nitrogen source nitrite 0.5mM -0.3 -1.7 compare
pH Growth at pH6 and (C) D-Glucose -0.3 -1.4 compare
carbon source Ethyl decanoate and D-Glucose (C)s -0.3 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 +1.7 compare
stress Growth with Chloride 500 mM +0.3 +1.9 compare
stress Growth with Chloride 500 mM; with MOPS +0.3 +1.5 compare
carbon source p-Coumaric (C) +0.3 +2.4 compare
temperature shift Temperature shift 30_to_21; with MOPS +0.3 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.3 compare
temperature Growth at 25C; with MOPS +0.3 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.4 +2.5 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.4 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.8 compare
nitrogen source nitrate (N) +0.5 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5 +1.9 compare
pH Growth at pH8 and (C) D-Glucose +0.6 +3.4 compare