Fitness data for PP_0524 in Pseudomonas putida KT2440

putative Periplasmic cobalamin-binding protein HutB
SEED: Vitamin B12 ABC transporter, B12-binding component BtuF
KEGG: iron complex transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source D-Glucose (C) -1.2 -2.4 compare
carbon source carbon source 4-vinylphenol 0.1 mM -1.1 -3.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.9 -2.6 compare
nitrogen source 2,6-diaminopimelic (N) -0.9 -1.2 compare
carbon source acetate (C) -0.8 -1.9 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.8 -2.5 compare
nitrogen source nitrogen source nitrite 0.5mM -0.8 -3.1 compare
pH Growth at pH9 and (C) Trisodium citrate -0.8 -2.5 compare
stress R2A with Fusaric 480 ug/mL -0.7 -1.7 compare
carbon source carbon source D-Glucose 55.5 mM -0.7 -2.2 compare
nitrogen source Urea (N) -0.7 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.7 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -2.2 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.7 -1.7 compare
nitrogen source NAG (N); with MOPS -0.7 -0.8 compare
carbon source carbon source 2-Deoxy-D-glucose 10 mM -0.6 -1.6 compare
pH Growth at pH8 and (C) D-Glucose -0.6 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +2.7 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.6 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +1.8 compare