Fitness data for PP_0410 in Pseudomonas putida KT2440

DNA-binding response regulator UhpA
SEED: DNA-binding response regulator, LuxR family, near polyamine transporter

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
carbon source Beta-alanine (C) -3.8 -6.4 compare
carbon source Beta-alanine (C) -3.6 -5.7 compare
carbon source 4-Aminobutyric 10 mM (C) -2.9 -4.4 compare
nitrogen source Beta-alanine (N) -1.4 -6.7 compare
pH Growth at pH7 and (C) D-Glucose -1.2 -1.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -1.1 -2.6 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -1.0 -3.1 compare
nitrogen source Beta-alanine (N) -1.0 -5.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 -2.0 compare
nitrogen source D-2-Aminobutyric (N) -0.8 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7 -2.3 compare
temperature shift Temperature shift 30_to_34; with MOPS -0.7 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -2.7 compare
dilutelb LB 0.1x with 55.5 mM D-Glucose -0.7 -3.3 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.3 compare
carbon source 1,4-Butanediol (C) +0.8 +4.2 compare
nitrogen source Propandiamine (N) +1.0 +3.2 compare
carbon source 1,4-Butanediol (C) +1.0 +6.9 compare