Fitness data for PP_0386 in Pseudomonas putida KT2440

Sensory box protein
SEED: sensory box/GGDEF domain/EAL domain protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.4 -6.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 -5.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5 -3.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.4 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.4 -3.1 compare
carbon source D-Glucose (C) 1.25 mM +0.4 +3.1 compare
carbon source Rhamnogalacturonan - from potato (C) +0.4 +3.0 compare
carbon source L-Leucine (C) +0.4 +2.6 compare
carbon source Rhamnogalacturonan - from potato (C) +0.4 +3.0 compare
carbon source Trisodium citrate (C) +0.4 +2.4 compare
nitrogen source D-2-Aminobutyric (N) +0.4 +2.3 compare
carbon source D-Glucuronic gamma lactone (C) +0.4 +3.3 compare
carbon source ferulate (C); with MOPS +0.4 +2.2 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.4 +3.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5 +2.9 compare
carbon source Succinic Acid (C) +0.6 +4.9 compare
carbon source Succinic Acid (C) +0.6 +4.8 compare
carbon source a-Ketoglutaric (C) +1.1 +9.1 compare