Fitness data for PP_0296 in Pseudomonas putida KT2440

choline / betaine / carnitine ABC transporter - substrate binding protein
SEED: L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1)
KEGG: glycine betaine/proline transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source Carnitine Hydrochloride (N) -1.7 -5.8 compare
nitrogen source Carnitine Hydrochloride (N) -1.4 -5.2 compare
nitrogen source Choline chloride (N) -0.9 -5.9 compare
nitrogen source Choline chloride (N) -0.8 -4.6 compare
phage P. putida Sci Big MOI 0.1 -0.7 -2.3 compare
phage P. putida Sci small MOI 0.1 -0.6 -2.0 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.5 -2.4 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.5 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -2.1 compare
temperature Growth at 25C -0.5 -2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.5 -2.0 compare
carbon source 4-Aminobutyric 10 mM (C) -0.5 -2.1 compare
carbon source Delta-Decalactone (C) -0.4 -2.4 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4 -2.0 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM +0.4 +2.2 compare
carbon source D-Glucose (C) +0.4 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +1.6 compare
nitrogen source nitrogen source nitrite 0.5mM +0.4 +2.1 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +0.4 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.0 compare