Fitness data for PP_0284 in Pseudomonas putida KT2440

gamma-aminobutyrate permease
SEED: transport permease protein of gamma-aminobutyrate
KEGG: amino acid transporter, AAT family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source L-Proline (N) -0.9 -6.7 compare
nitrogen source L-Proline (N) -0.7 -6.0 compare
carbon source L-Alanine (C) -0.6 -3.2 compare
nitrogen source D-Alanine (N) -0.5 -4.1 compare
carbon source L-Proline (C) -0.5 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5 -2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -2.2 compare
nitrogen source D-Alanine (N) -0.4 -3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.4 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.4 -2.3 compare
nitrogen source L-Serine (N) -0.4 -3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -1.8 compare
nitrogen source Glycine (N) -0.4 -2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.9 compare
nitrogen source 2,6-diaminopimelic (N) +0.4 +1.8 compare
stress Growth with Chloride 500 mM; with MOPS +0.4 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +2.8 compare
nitrogen source NAG (N); with MOPS +0.5 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.9 compare