Fitness data for PP_0203 in Pseudomonas putida KT2440

putative dipeptidase
SEED: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -0.4 -1.9 compare
pH pH 4 -0.4 -1.8 compare
temperature shift Temperature shift 30_to_25 -0.4 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -1.9 compare
carbon source D-Glucose (C) 2.5 mM -0.3 -2.3 compare
temperature Growth at 30C; with MOPS -0.3 -1.4 compare
carbon source ferulate (C); with MOPS -0.3 -1.5 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.3 -1.5 compare
carbon source Lauric (C) -0.3 -1.9 compare
nitrogen source NAG (N); with MOPS -0.3 -1.4 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. -0.3 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.3 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.8 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +0.3 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +1.9 compare
nitrogen source DL-2-Aminobutyric (N) +0.3 +2.4 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.3 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.5 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.4 +2.2 compare