Fitness data for PP_0200 in Pseudomonas putida KT2440

putative membrane bound peptidase, nefD
SEED: Putative membrane-bound ClpP-class protease associated with aq_911
KEGG: membrane-bound serine protease (ClpP class)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -1.0 -3.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -2.0 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -0.5 -1.9 compare
pH Growth at pH6 and (C) D-Glucose -0.5 -2.6 compare
temperature shift Temperature shift 30_to_25 -0.4 -2.1 compare
carbon source Tween 20 (C) -0.4 -1.7 compare
temperature Growth at 25C -0.4 -1.7 compare
nitrogen source nitrogen source nitrite 1mM -0.4 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.8 compare
carbon source Acetate Carbon Source (20mM) -0.4 -2.0 compare
stress NaCl stress 250 mM -0.4 -2.2 compare
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -0.4 -1.8 compare
micoeukaryotes C.elegans, mixed culture-2 +0.4 +2.2 compare
pH pH 6 +0.4 +1.6 compare
carbon source D-Galacturonic Acid (C) +0.4 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.5 compare
phage P. putida Sci small MOI 0.1 +0.4 +1.8 compare
carbon source D-Glucose (C) +0.4 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +2.6 compare