Fitness data for PP_0189 in Pseudomonas putida KT2440

putative heme biosynthesis protein
SEED: Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives)
KEGG: HemY protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.6 -4.2 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.4 -4.3 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) -1.4 -3.2 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.3 -5.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -4.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -3.4 compare
pH pH 9 -0.8 -1.7 compare
pH Growth at pH6 and (C) Trisodium citrate -0.8 -1.5 compare
carbon source Cholinium lysinate (C) -0.7 -3.0 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.7 -1.8 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 +1.9 compare
pH LB 0.1x with 55.5 mM D-Glucose; pH 4.6 +0.7 +2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.7 +3.0 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.8 +2.9 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +0.9 +2.9 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +0.9 +3.2 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.9 +4.3 compare
carbon source ferulate (C); with MOPS +1.0 +3.5 compare
carbon source ferulate (C); with MOPS +1.0 +3.6 compare
nitrogen source D-2-Aminobutyric (N) +1.3 +3.2 compare