Fitness data for PP_0107 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 -3.8 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -3.8 compare
carbon source L-Leucine (C) -0.8 -3.0 compare
nitrogen source 2,6-diaminopimelic (N) -0.7 -1.7 compare
pH Growth at pH6 and (C) D-Glucose -0.7 -1.8 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.6 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -1.4 compare
temperature shift Temperature shift 10_to_25; with MOPS -0.6 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -3.2 compare
nitrogen source nitrogen source nitrite 0.5mM -0.5 -1.8 compare
phage P. putida Sci Big MOI 0.1 -0.5 -1.8 compare
carbon source carbon source 4-vinylphenol 0.01 mM -0.5 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -3.1 compare
pH Growth at pH8 and (C) D-Glucose -0.5 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -2.5 compare
carbon source L-Phenylalanine 5 mM (C) -0.5 -2.6 compare
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -0.5 -2.4 compare
temperature Growth at 25C; with MOPS -0.5 -1.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.5 +1.6 compare