Fitness data for PP_0051 in Pseudomonas putida KT2440

putative sigma-54 dependent transcriptional regulator
SEED: Sigma-54 dependent transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source L-Alanine (C) -0.7 -2.9 compare
carbon source L-Leucine (C) -0.6 -2.2 compare
carbon source 4-Hydroxyvalerate (C) (40mM) -0.6 -3.1 compare
carbon source Valeric (C) -0.5 -1.6 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -0.5 -2.2 compare
temperature shift Temperature shift 30_to_25 -0.5 -1.8 compare
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL -0.5 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5 -2.6 compare
pH pH 7 +0.5 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +2.1 compare
nitrogen source nitrogen source nitrite 1mM +0.5 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +2.6 compare
pH pH 9 +0.5 +1.9 compare
pH pH 5 +0.6 +2.2 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.6 +2.2 compare
carbon source carbon source Bisabolene 48.9 mM +0.6 +2.4 compare
carbon source ferulate (C); with MOPS +0.6 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +2.1 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +1.7 compare
pH pH 8 +0.8 +2.7 compare