Fitness data for PP_0003 in Pseudomonas putida KT2440

16S RNA methyltransferase
SEED: rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB
KEGG: ribosomal RNA small subunit methyltransferase G

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.8)


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group condition fitness t score  
pH Growth at pH7 and (C) D-Glucose -4.0 -3.7 compare
temperature shift Temperature shift 30_to_25 -3.4 -4.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.7 -3.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.6 -4.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.4 -3.0 compare
pH Growth at pH6 and (C) D-Glucose -2.2 -2.6 compare
nitrogen source Urea (N); with MOPS -2.2 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.1 -3.1 compare
temperature Growth at 30C; with MOPS -2.0 -2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.0 -3.2 compare
nitrogen source NAG (N); with MOPS -2.0 -1.6 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.9 -3.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.9 -3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.9 -1.9 compare
carbon source carbon source D-Glucose 55.5 mM -1.8 -1.3 compare
carbon source 4-Methyl-2-oxopentanoic (C) -1.8 -3.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.8 -2.7 compare
pH Growth at pH6 and (C) Trisodium citrate -1.8 -2.4 compare
carbon source D-Glucose (C) -1.8 -2.4 compare
phage P. put PUT 10 MOI 10 +2.1 +7.9 compare