Fitness data for PS417_04810 in Pseudomonas simiae WCS417

poly(beta-D-mannuronate) lyase
SEED: Alginate lyase precursor (EC 4.2.2.3)
KEGG: poly(beta-D-mannuronate) lyase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
seeds Growth on radish seeds for 72 hours -1.4 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 -2.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -2.8 compare
phage JP1 MOI 10 -0.8 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -1.9 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.6 -1.9 compare
soil soil sample 3; outgrowth in LB -0.6 -1.7 compare
nitrogen source Inosine (N) -0.6 -2.2 compare
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.6 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +0.9 compare
stress Aluminum chloride 4 mM +0.6 +2.5 compare
solid stress 80% Methanol 3 mM; solid stress +0.6 +1.3 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.6 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +2.3 compare
stress methylglyoxal 0.032 vol% +0.7 +1.5 compare
carbon source L-Valine (C) +0.7 +1.5 compare
phage P. simiae Grant Run MOI 10 +1.1 +1.5 compare