Fitness data for PS417_03955 in Pseudomonas simiae WCS417

hydrolase TatD
SEED: Putative deoxyribonuclease YjjV
KEGG: TatD DNase family protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
seeds Growth on radish seeds for 72 hours -0.8 -2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.7 compare
phage P. simiae OR Antrim MOI 0.1 -0.6 -2.3 compare
phage P. simiae OR Antrim MOI 1 -0.5 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -2.4 compare
phage Wcs_1 -0.4 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -1.8 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.4 -2.1 compare
phage P. simiae OR Antrim MOI 10 -0.4 -1.5 compare
phage JP1 MOI 1 -0.4 -1.2 compare
seeds Growth on radish seeds for 72 hours -0.4 -1.6 compare
carbon source Carbon source D-Mannitol 5 mM +0.4 +2.2 compare
soil soil sample 2; outgrowth in LB +0.4 +2.0 compare
solid stress Fraxetin 3 mM; solid stress +0.4 +2.3 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.7 compare
solid stress 80% Methanol 3 mM; solid stress +0.5 +2.7 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.5 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +0.8 compare
carbon source L-Valine (C) +0.7 +3.0 compare