Fitness data for PS417_03700 in Pseudomonas simiae WCS417

TonB-dependent receptor
SEED: Ferrichrome-iron receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. simiae Grant Run MOI 0.1 -0.5 -2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.9 compare
nitrogen source Adenine (N) -0.3 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -1.9 compare
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.3 -2.0 compare
motility outer cut, LB soft agar motility assay +0.3 +1.8 compare
liquid stress Fraxetin 3 mM; liquid stress +0.3 +1.8 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +1.9 compare
motility inner cut, LB soft agar motility assay +0.3 +1.6 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.2 compare
phage P. simiae ORA MOI 0.1 +0.3 +1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.4 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.5 +2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.3 compare
carbon source Trisodium citrate (C) +0.5 +1.9 compare