Fitness data for PS417_03545 in Pseudomonas simiae WCS417

type III secretion protein
SEED: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)
KEGG: type III secretion protein SctJ

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -3.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 -2.2 compare
stress Gentamicin 0.008 mg/ml -0.4 -2.2 compare
stress Doxycycline hyclate 0.001 mg/ml -0.4 -2.1 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.4 +1.8 compare
soil soil sample 2; outgrowth in LB +0.4 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB +0.4 +2.9 compare
stress LB_noSalt with Chloride 1100 mM +0.4 +3.2 compare
soil soil sample 7; outgrowth in LB +0.4 +2.0 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.4 +2.6 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.4 +2.6 compare
carbon source L-Valine (C) +0.5 +1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.5 +2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.5 +2.9 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +0.5 +2.6 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.5 +3.3 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +2.6 compare