Fitness data for PS417_03535 in Pseudomonas simiae WCS417

type III secretion protein
KEGG: type III secretion protein SctL

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -2.1 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.7 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.8 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.6 -2.5 compare
carbon source L-Valine (C) -0.5 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.2 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.5 -2.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.5 +2.5 compare
phage P. simiae OR1 MOI 0.1 +0.5 +1.9 compare
carbon source Trisodium citrate (C) +0.5 +0.9 compare
phage P. simiae ORA MOI 0.1 +0.6 +2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +3.4 compare
motility outer cut, LB soft agar motility assay +0.6 +3.0 compare
phage P. simiae OR Antrim MOI 0.1 +0.6 +2.0 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +0.6 +3.0 compare
seeds Growth on radish seeds for 24 hours +0.7 +3.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +2.4 compare
soil soil sample 3; outgrowth in LB +0.8 +2.9 compare
carbon source Trisodium citrate (C) +0.9 +1.3 compare