Fitness data for PS417_03520 in Pseudomonas simiae WCS417

secretin
SEED: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)
KEGG: type III secretion protein SctC

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -2.7 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 -2.2 compare
seeds Growth on radish seeds for 72 hours -0.3 -1.3 compare
stress R2A with Fusaric 120 ug/mL -0.3 -2.0 compare
carbon source L-Alanine (C) -0.3 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.3 -1.7 compare
carbon source a-Ketoglutaric (C) -0.3 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3 +1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +1.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 +0.7 compare
solid stress 80% Methanol 3 mM; solid stress +0.3 +1.8 compare
phage JP1 MOI 10 +0.3 +1.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.3 +2.0 compare
phage P. simiae ORA MOI 0.1 +0.4 +1.7 compare
phage P. simiae Grant Run MOI 0.1 +0.4 +1.6 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.4 +2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +1.8 compare
stress LB_noSalt with Chloride 1100 mM +0.4 +3.0 compare
stress Gentamicin 0.008 mg/ml +0.4 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.2 compare