Fitness data for PS417_03500 in Pseudomonas simiae WCS417

type III secretion system protein
SEED: Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components)
KEGG: type III secretion protein SctT

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6 -1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -2.7 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.5 -1.9 compare
motility inner cut, LB soft agar motility assay -0.4 -2.2 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.4 +2.4 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.5 +2.0 compare
solid stress Fraxetin 3 mM; solid stress +0.5 +1.9 compare
phage P. simiae OR Antrim MOI 10 +0.5 +1.7 compare
carbon source L-Valine (C) +0.5 +1.5 compare
carbon source L-Valine (C) +0.5 +1.5 compare
soil soil sample 3; outgrowth in LB +0.5 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +0.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB +0.5 +2.7 compare
phage JP1 MOI 0.1 +0.5 +2.1 compare
phage P. simiae Grant Run MOI 10 +0.6 +1.7 compare
seeds Growth on radish seeds for 72 hours +0.8 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +3.2 compare