Fitness data for PS417_03490 in Pseudomonas simiae WCS417

type III secretion system protein SsaR
SEED: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)
KEGG: type III secretion protein SctR

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source L-Valine (C) -1.4 -2.4 compare
stress Gentamicin 0.008 mg/ml -1.3 -3.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -1.5 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.7 -1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 -2.2 compare
seeds Growth on radish seeds for 72 hours -0.6 -1.9 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.6 -1.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -1.4 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +2.3 compare
solid stress Fraxetin 2 mM; solid stress +0.7 +2.3 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.7 +2.8 compare
phage P. simiae Grant Run MOI 0.1 +0.7 +2.1 compare
soil soil sample 5; outgrowth in LB +0.8 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.2 +1.1 compare