Fitness data for PS417_03345 in Pseudomonas simiae WCS417

type I secretion protein TolC
SEED: Heavy metal RND efflux outer membrane protein, CzcC family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
soil soil sample 2; outgrowth in LB -1.2 -2.4 compare
carbon source L-Valine (C) -1.2 -2.6 compare
supernatant control Vogels_fungal_media 0.1X -0.9 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -3.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -2.6 compare
solid stress Fraxetin 2 mM; solid stress -0.7 -1.9 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.7 -2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.7 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -1.6 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -0.6 -1.4 compare
root root sample 6; outgrowth in LB -0.6 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 -2.3 compare
phage P. simiae Grant Run MOI 10 -0.6 -1.8 compare
stress 1-ethyl-3-methylimidazolium chloride 200 mM +0.6 +2.1 compare
soil soil sample 7; outgrowth in LB +0.6 +1.3 compare
carbon source Carbon source L-Citrulline 5 mM +0.6 +2.1 compare
seeds Growth on radish seeds for 72 hours +0.9 +2.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 +3.3 compare