Fitness data for PS417_28525 in Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: FIG006045: Sigma factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.3 -3.0 compare
phage P. simiae Grant Run MOI 10 -1.0 -2.9 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.8 -2.5 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.8 -3.5 compare
phage P. simiae Grant Run MOI 0.1 -0.8 -3.3 compare
motility outer cut, LB soft agar motility assay -0.7 -2.5 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.7 -3.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -2.0 compare
nophagecontrol Only library -0.7 -2.2 compare
motility outer cut, LB soft agar motility assay -0.7 -2.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.7 -2.4 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.7 -2.5 compare
supernatant control Vogels_fungal_media 0.1X -0.7 -1.9 compare
carbon source Gly-Glu (C) -0.7 -2.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB -0.7 -3.0 compare
carbon source L-Valine (C) -0.6 -1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.7 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.0 compare
seeds Growth on radish seeds for 72 hours +0.9 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.2 +3.4 compare