Fitness data for PS417_28235 in Pseudomonas simiae WCS417

diguanylate cyclase
SEED: Sensory box/GGDEF family protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 -3.1 compare
solid stress Fraxetin 3 mM; solid stress -0.5 -1.6 compare
phage P. simiae OR Antrim MOI 10 -0.5 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 -1.9 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 +1.8 compare
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 +1.7 compare
soil soil sample 5; outgrowth in LB +0.4 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +1.6 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +0.5 +2.1 compare
liquid stress 80% Methanol 3 mM; liquid stress +0.5 +3.0 compare
phage P. simiae ORA MOI 0.1 +0.5 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.7 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +2.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +3.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.6 compare
root root sample 6; outgrowth in LB +0.6 +2.4 compare
carbon source L-Valine (C) +0.6 +2.6 compare