Fitness data for PS417_27995 in Pseudomonas simiae WCS417

type IV secretion protein Rhs
SEED: Rhs-family protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.2 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +1.4 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.2 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.2 +1.5 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.2 +1.6 compare
stress LB_noSalt with Chloride 1100 mM +0.2 +1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +1.5 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +1.8 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.2 +1.9 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +1.8 compare
carbon source L-Valine (C) +0.2 +1.8 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.3 +2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3 +2.0 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.3 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +2.5 compare