Fitness data for PS417_27935 in Pseudomonas simiae WCS417

type VI secretion protein
SEED: Type VI secretion lipoprotein/VasD
KEGG: type VI secretion system protein VasD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.8 -1.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 -1.0 compare
seeds Growth on radish seeds for 72 hours -2.2 -1.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.9 -1.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.7 -1.2 compare
phage P. simiae OR Antrim MOI 1 -1.5 -1.0 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 -0.8 compare
phage JP1 MOI 10 -1.3 -0.8 compare
phage Wcs_1 -1.1 -0.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -0.9 compare
carbon source RCH2_defined_glucose with MS_media 1x -1.1 -1.7 compare
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -1.1 -1.4 compare
no phage control Time6-nophage -1.0 -1.3 compare
carbon source 2'-Deoxyinosine 5 mM (C) +1.1 +1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +1.1 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.2 +1.5 compare
motility inner cut, LB soft agar motility assay +1.2 +1.9 compare
root root sample 6; outgrowth in LB +1.2 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.2 +1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.5 +2.1 compare