Fitness data for PS417_26760 in Pseudomonas simiae WCS417

oxidase
SEED: Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB
KEGG: oxygen-independent coproporphyrinogen III oxidase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 -4.2 compare
carbon source Gly-Glu (C) -1.7 -7.1 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.5 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 -2.3 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.4 -6.0 compare
carbon source Gly-Glu (C) -1.4 -5.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.3 -2.5 compare
root root sample 6; outgrowth in LB -1.3 -4.1 compare
soil soil sample 7; outgrowth in LB -1.3 -3.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -2.6 compare
rhizosphere rhizosphere sample 1; outgrowth in LB -1.1 -2.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -2.8 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.1 -2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -2.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -3.4 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.1 -3.7 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.0 -3.6 compare
stress Nalidixic 0.025 mg/ml +1.2 +8.6 compare
stress Gentamicin 0.008 mg/ml +1.3 +4.0 compare