Fitness data for PS417_00265 in Pseudomonas simiae WCS417

GMC family oxidoreductase
SEED: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein
KEGG: gluconate 2-dehydrogenase alpha chain

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
stress Neomycin 0.04 mg/ml -0.4 -2.8 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.3 -1.5 compare
ecofab LB 0.5x in EcoFAB_3.5mL -0.3 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 -1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.8 compare
liquid stress 80% Methanol 1 mM; liquid stress +0.3 +2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +1.7 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.3 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.5 compare
stress methylglyoxal 0.032 vol% +0.3 +1.1 compare
carbon source L-Valine (C) +0.3 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +1.9 compare
seeds Growth on radish seeds for 72 hours +0.3 +1.5 compare
liquid stress 80% Methanol 2 mM; liquid stress +0.3 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 +1.5 compare
solid stress Fraxetin 0.5 mM; solid stress +0.4 +2.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +2.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.6 compare
stress Gentamicin 0.008 mg/ml +0.6 +2.0 compare