Fitness data for PS417_26305 in Pseudomonas simiae WCS417

AraC family transcriptional regulator
SEED: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
phage P. simiae ORA MOI 10 -1.5 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.1 -2.7 compare
seeds Growth on radish seeds for 72 hours -1.0 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -1.4 compare
carbon source Carbon source D-Mannitol 5 mM -0.9 -2.1 compare
phage JP1 MOI 10 -0.9 -1.7 compare
motility inner cut, LB soft agar motility assay -0.8 -1.8 compare
nitrogen source Urea (N) -0.8 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -1.0 compare
soil soil sample 3; outgrowth in LB -0.8 -1.7 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.8 -2.7 compare
carbon source D-Sorbitol (C) -0.8 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +1.2 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +0.8 +2.2 compare
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.8 +2.4 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.8 +1.4 compare
motility outer cut, LB soft agar motility assay +0.8 +1.6 compare
carbon source 2'-Deoxyinosine 5 mM (C) +1.1 +2.1 compare
soil soil sample 4; outgrowth in LB +2.3 +4.0 compare