Fitness data for PS417_26190 in Pseudomonas simiae WCS417

sarcosine oxidase subunit beta
SEED: Sarcosine oxidase beta subunit (EC 1.5.3.1)
KEGG: sarcosine oxidase, subunit beta

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
rhizosphere rhizosphere sample 1; outgrowth in LB -1.2 -2.9 compare
root root sample 6; outgrowth in LB -1.2 -1.8 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.9 -3.7 compare
soil soil sample 6; outgrowth in LB -0.9 -3.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -3.1 compare
soil soil sample 4; outgrowth in LB -0.9 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.8 -2.1 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -1.7 compare
soil soil sample 8; outgrowth in LB -0.8 -1.6 compare
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.8 -3.4 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -0.7 -1.6 compare
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x -0.7 -3.3 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.7 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 -2.5 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x -0.6 -3.3 compare
phage Wcs_0.1 +0.7 +1.8 compare
phage P. simiae ORA MOI 0.1 +0.7 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.0 +0.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.2 +3.0 compare