Fitness data for PS417_26110 in Pseudomonas simiae WCS417

ABC transporter permease
SEED: Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1)
KEGG: polar amino acid transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
stress Gentamicin 0.008 mg/ml -0.4 -2.4 compare
phage P. simiae OR1 MOI 0.1 -0.3 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.5 compare
carbon source Gly-Glu (C) +0.3 +1.7 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 +1.8 compare
rhizosphere rhizosphere sample 8; outgrowth in LB +0.3 +1.7 compare
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 +2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +1.6 compare
soil soil sample 4; outgrowth in LB +0.3 +1.7 compare
phage JP1 MOI 1 +0.3 +2.0 compare
phage JP1 MOI 0.1 +0.3 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +2.1 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +0.4 +2.3 compare
soil soil sample 5; outgrowth in LB +0.4 +2.1 compare
phage JP1 MOI 1 +0.4 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +2.5 compare
root root sample 6; outgrowth in LB +0.5 +2.7 compare