Fitness data for PS417_26100 in Pseudomonas simiae WCS417

amino acid ABC transporter
SEED: Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)
KEGG: polar amino acid transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
no stress control on plate growth on LB_noSalt plate -0.8 -2.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.7 -1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -1.4 compare
motility inner cut, LB soft agar motility assay -0.7 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.6 -1.5 compare
stress Gentamicin 0.008 mg/ml -0.6 -1.8 compare
carbon source D-Ribose (C) -0.6 -2.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.5 -2.4 compare
carbon source L-Leucine (C) -0.5 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -1.9 compare
carbon source Glycerol (C) -0.5 -1.7 compare
solid stress Scopoletin 3 mM; solid stress +0.5 +2.7 compare
phage P. simiae OR Antrim MOI 1 +0.6 +2.3 compare
carbon source 2'-Deoxyinosine 5 mM (C) +0.6 +3.0 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +0.6 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.8 compare
phage P. simiae ORA MOI 0.1 +0.6 +1.7 compare
soil soil sample 3; outgrowth in LB +0.8 +2.8 compare
phage Wcs_1 +0.9 +3.2 compare