Fitness data for PS417_23815 in Pseudomonas simiae WCS417

pseudouridine synthase
SEED: Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
solid stress Fraxetin 3 mM; solid stress -0.8 -2.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -1.7 compare
carbon source 2-Deoxy-D-Ribose (C) -0.6 -2.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -1.4 compare
stress Doxycycline hyclate 0.001 mg/ml -0.5 -1.8 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.5 -1.1 compare
stress LB_noSalt with Chloride 500 mM -0.5 -2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.5 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.5 -2.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -2.2 compare
carbon source Gly-Glu (C) +0.5 +2.1 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.5 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 +2.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +1.4 compare
carbon source Carbon source L-Citrulline 10 mM +0.6 +3.0 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.7 compare
phage P. simiae Grant Run MOI 0.1 +0.7 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +2.6 compare