Fitness data for PS417_23035 in Pseudomonas simiae WCS417

D-trehalose PTS system, I, HPr, and IIA components (from data)
Original annotation: PTS mannose transporter subunit IIC
SEED: PTS system, glucose-specific IIA component (EC 2.7.1.69) / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
KEGG: PTS system, fructose-specific IIA component ; phosphotransferase system, enzyme I, PtsI ; phosphocarrier protein FPr

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source D-Trehalose (C) -3.9 -6.2 compare
carbon source D-Trehalose (C) -3.4 -6.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8 -3.4 compare
stress methylglyoxal 0.032 vol% -0.7 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -3.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6 -1.9 compare
motility inner cut, LB soft agar motility assay -0.6 -2.1 compare
stress Doxycycline hyclate 0.001 mg/ml -0.5 -2.1 compare
phage JP1 MOI 1 +0.5 +2.5 compare
solid stress Fraxetin 3 mM; solid stress +0.5 +2.2 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +0.5 +2.6 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.6 +2.0 compare
phage P. simiae OR Antrim MOI 0.1 +0.6 +1.4 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x +0.6 +2.1 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.7 +3.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +2.3 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.8 +2.7 compare
solid stress Fraxetin 3 mM; solid stress +0.8 +4.6 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.8 +2.1 compare