Fitness data for PS417_22750 in Pseudomonas simiae WCS417

RND transporter
SEED: Probable RND efflux membrane fusion protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. simiae ORA MOI 0.1 -0.7 -3.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -2.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.4 compare
phage P. simiae Grant Run MOI 10 -0.4 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.8 compare
phage P. simiae Grant Run MOI 0.1 -0.3 -1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.5 compare
stress 6-methoxy-2(3H)-benzoxazolone 2.5 mM -0.3 -2.0 compare
carbon source Carbon source D-Mannitol 2.5 mM +0.3 +1.9 compare
seeds Growth on radish seeds for 72 hours +0.3 +1.6 compare
soil soil sample 3; outgrowth in LB +0.3 +1.5 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.3 compare
root root sample 6; outgrowth in LB +0.4 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.2 compare