Fitness data for PS417_22710 in Pseudomonas simiae WCS417

TonB-dependent receptor
SEED: TonB-dependent hemin , ferrichrome receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
solid stress Fraxetin 3 mM; solid stress -1.2 -7.3 compare
solid stress Fraxetin 3 mM; solid stress -0.9 -4.9 compare
solid stress Fraxetin 3 mM; solid stress -0.7 -4.9 compare
solid stress Fraxetin 3 mM; solid stress -0.7 -5.3 compare
solid stress Fraxetin 2 mM; solid stress -0.6 -4.0 compare
solid stress Fraxetin 2 mM; solid stress -0.5 -3.4 compare
solid stress Fraxetin 2 mM; solid stress -0.5 -3.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.9 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +0.4 +1.4 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +0.4 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5 +3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +2.0 compare
rhizosphere rhizosphere sample 8; outgrowth in LB +0.5 +2.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +2.2 compare
soil soil sample 3; outgrowth in LB +0.6 +1.5 compare
root root sample 6; outgrowth in LB +0.7 +2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.9 +4.9 compare