Fitness data for PS417_22645 in Pseudomonas simiae WCS417

C4-dicarboxylate ABC transporter
SEED: Nitrogen regulation protein NR(I)
KEGG: two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source a-Ketoglutaric (C) -1.7 -9.0 compare
carbon source a-Ketoglutaric (C) -1.4 -6.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -2.3 compare
nitrogen source Adenine (N) -0.5 -3.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -1.9 compare
seeds Growth on radish seeds for 72 hours -0.5 -1.4 compare
supernatant control Vogels_fungal_media 0.1X -0.4 -1.4 compare
carbon source D-Alanine (C) -0.4 -2.2 compare
stress Doxycycline hyclate 0.001 mg/ml -0.4 -1.6 compare
carbon source D-Glucosamine Hydrochloride (C) -0.4 -2.1 compare
nitrogen source Inosine (N) -0.4 -1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 +1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +2.1 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 +2.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +1.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.8 +2.7 compare