Fitness data for PS417_02185 in Pseudomonas simiae WCS417

type IV secretion protein Rhs
KEGG: type VI secretion system secreted protein VgrG

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. simiae ORA MOI 1 -1.0 -3.9 compare
phage P. simiae Grant Run MOI 10 -0.9 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.4 compare
seeds Growth on radish seeds for 72 hours -0.7 -2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB -0.6 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 -2.1 compare
motility inner cut, LB soft agar motility assay -0.6 -2.2 compare
phage P. simiae Grant Run MOI 10 -0.6 -2.2 compare
soil soil sample 2; outgrowth in LB -0.6 -1.6 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.5 -1.7 compare
liquid stress Fraxetin 2 mM; liquid stress -0.5 -1.6 compare
phage P. simiae Grant Run MOI 0.1 -0.5 -1.8 compare
seeds Growth on radish seeds for 72 hours -0.5 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.5 +1.3 compare
solid stress 80% Methanol 3 mM; solid stress +0.5 +2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 +2.4 compare
soil soil sample 7; outgrowth in LB +0.6 +1.7 compare