Fitness data for PS417_21945 in Pseudomonas simiae WCS417

RNA polymerase subunit sigma-24
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
motility inner cut, LB soft agar motility assay -0.6 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.4 compare
motility inner cut, LB soft agar motility assay -0.6 -2.0 compare
liquid stress 80% Methanol 2 mM; liquid stress +0.5 +1.0 compare
liquid stress 80% Methanol 3 mM; liquid stress +0.6 +1.0 compare
soil soil sample 8; outgrowth in LB +0.6 +0.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +1.7 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +1.8 compare
liquid stress Fraxetin 2 mM; liquid stress +0.6 +1.0 compare
liquid stress Scopoletin 2 mM; liquid stress +0.6 +1.3 compare
soil soil sample 6; outgrowth in LB +0.6 +1.0 compare
soil soil sample 4; outgrowth in LB +0.6 +0.9 compare
liquid stress 80% Methanol 3 mM; liquid stress +0.7 +1.2 compare
liquid stress Fraxetin 2 mM; liquid stress +0.7 +1.2 compare
soil soil sample 2; outgrowth in LB +0.8 +1.4 compare
root root sample 6; outgrowth in LB +0.9 +1.0 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +1.0 +1.0 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +2.0 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +1.0 +1.2 compare
rhizosphere rhizosphere sample 8; outgrowth in LB +1.1 +1.5 compare