Fitness data for PS417_20955 in Pseudomonas simiae WCS417

secretion protein
SEED: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)
KEGG: type III secretion protein SctC

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -2.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +2.1 compare
nophagecontrol TIme6-nophage +0.5 +3.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.8 compare
soil soil sample 8; outgrowth in LB +0.6 +1.4 compare
soil soil sample 5; outgrowth in LB +0.8 +2.0 compare
soil soil sample 2; outgrowth in LB +0.8 +2.1 compare
soil soil sample 3; outgrowth in LB +0.9 +2.7 compare
soil soil sample 6; outgrowth in LB +0.9 +2.2 compare
soil soil sample 7; outgrowth in LB +0.9 +2.3 compare
soil soil sample 4; outgrowth in LB +0.9 +2.2 compare
rhizosphere rhizosphere sample 8; outgrowth in LB +1.1 +2.5 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +1.5 +3.5 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +1.6 +3.1 compare
root root sample 6; outgrowth in LB +1.8 +3.0 compare