Fitness data for PS417_20715 in Pseudomonas simiae WCS417

cytochrome Cbb3
SEED: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
KEGG: cb-type cytochrome c oxidase subunit III

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.8)


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group condition fitness t score  
ecofab LB in EcoFAB_3.5mL -4.1 -4.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.3 -3.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.8 -3.3 compare
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 -2.6 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.5 -2.9 compare
liquid stress 80% Methanol 2 mM; liquid stress -2.3 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.2 -1.6 compare
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2 -2.2 -2.1 compare
phage P. simiae ORA MOI 0.1 -2.1 -3.0 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -2.1 -2.4 compare
phage JP1 MOI 10 -2.0 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.9 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.9 -2.2 compare
liquid stress Scopoletin 2 mM; liquid stress -1.9 -2.5 compare
no stress control TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1 -1.8 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.9 +1.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +1.9 +6.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.9 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.9 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +2.0 +1.8 compare